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1

Circular dichroism and conformational polymorphism of DNA

Kypr, J., Kejnovska, I., Renciuk, D., Vorlickova, M.

Journal:

Nucleic Acids Research

Année:

2009

Langue:

english

Fichier:

PDF, 8.70 MB

english, 2009

2

Crosslinking of the complementary strands of DNA by UV light: dependence on the oligonucleotide composition of the UV irradiated DNA

Karel Nejedlý, Radim Kittner, Šárka Pospı́šilová, Jaroslav Kypr

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Année:

2001

Langue:

english

Fichier:

PDF, 312 KB

english, 2001

3

Circular dichroism and guanine quadruplexes

Michaela Vorlíčková, Iva Kejnovská, Janos Sagi, Daniel Renčiuk, Klára Bednářová, Jitka Motlová, Jaroslav Kypr

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 2.04 MB

english, 2012

4

N.m.r. and c.d. studies of the DNA fragments d(TATATATA) and d(TATATA) in solution

Vladimir Sklenář, Jaroslav Kypr, Ad Bax, Gerald Zon, Michaela Vorličkova

Journal:

International Journal of Biological Macromolecules

Année:

1989

Langue:

english

Fichier:

PDF, 411 KB

english, 1989

5

Millimolar concentrations of zinc and other metal cations cause sedimentation of DNA

Kejnovsky, E., Kypr, J.

Journal:

Nucleic Acids Research

Année:

1998

Langue:

english

Fichier:

PDF, 98 KB

english, 1998

6

Circular dichroism spectroscopy analysis of conformational transitions of a 54 base pair DNA duplex composed of alternating CGCGCG and TATATA blocks

Jaroslav Kypr, Jiří Štěpán, Jana Chládková, Michaela Vorlíčková

Journal:

Biospectroscopy

Année:

1999

Langue:

english

Fichier:

PDF, 283 KB

english, 1999

7

Dimethylsulfoxide-stabilized conformer of guanine-adenine repeat strand of DNA

Jaroslav Kypr, Michaela Vorlíčková

Journal:

Année:

2001

Langue:

english

Fichier:

PDF, 143 KB

english, 2001

8

Circular dichroism spectroscopy reveals invariant conformation of guanine runs in DNA

Jaroslav Kypr, Michaela Vorlíčková

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 74 KB

english, 2002

9

Ethanol is a better inducer of DNA guanine tetraplexes than potassium cations

Michaela Vorlíčková, Klára Bednářová, Jaroslav Kypr

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 405 KB

english, 2006

10

Towards a better understanding of the unusual conformations of the alternating guanine–adenine repeat strands of DNA

Iva Kejnovská, Jaroslav Kypr, Jitka Vondrušková, Michaela Vorlíčková

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 493 KB

english, 2007

11

Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions

Michaela Vorlíčková, Klára Bednářová, Iva Kejnovská, Jaroslav Kypr

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 440 KB

english, 2007

12

Conformations of DNA strands containing GAGT, GACA, or GAGC tetranucleotide repeats

Jaroslav Kypr, Iva Kejnovská, Michaela Vorlíčková

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 451 KB

english, 2007

13

Guanine quadruplex formation by RNA/DNA hybrid analogs of Oxytricha telomere G4T4G4 fragment

Jitka Vondrušková, Jaroslav Kypr, Iva Kejnovská, Markéta Fialová, Michaela Vorlíčková

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 430 KB

english, 2008

14

CGG repeats associated with fragile X chromosome form left-handed Z-DNA structure

Daniel Renčiuk, Jaroslav Kypr, Michaela Vorlíčková

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2011

15

Cooperative changes in the chiroptical properties of DNA induced by methanol

Michaela Vorlíčková, Elvira E. Minyat, Jaroslav Kypr

Journal:

Année:

1984

Langue:

english

Fichier:

PDF, 204 KB

english, 1984

16

Computer simulation of DNA supercoiling in a simple elastomechanical approximation

Pavla Šelepová, Jaroslav Kypr

Journal:

Année:

1985

Langue:

english

Fichier:

PDF, 769 KB

english, 1985

17

Phosphorus nmr spectra of natural DNA fragments in the course of the B-to-A conformational transition

Jaroslav Kypr, Vladimír Sklenář, Michaela Vorlíč-ková

Journal:

Année:

1986

Langue:

english

Fichier:

PDF, 549 KB

english, 1986

18

Salt-induced isomerization of a synthetic RNA poly[r(A-U)]

Michaela Vorlíčková, Jaroslav Kypr, Thomas M. Jovin

Journal:

Année:

1988

Langue:

english

Fichier:

PDF, 229 KB

english, 1988

19

CD of the synthetic RNA duplexes poly[r(A-T)] and poly[r(A-U)] in salt and ethanolic solutions

Michaela Voriíčková, Jaroslav Kypr, Thomas M. Jovin, Max Planck

Journal:

Année:

1990

Langue:

english

Fichier:

PDF, 598 KB

english, 1990

20

Vacuum-UV CD spectrum of the X-form of double-stranded poly(dA-dT)

Michaela Vorlíčková, W. Curtis Johnson Jr., Jaroslav Kypr

Journal:

Année:

1994

Langue:

english

Fichier:

PDF, 233 KB

english, 1994

21

Circular dichroism spectroscopy of conformers of (guanine + adenine) repeat strands of DNA

Iva Kejnovská, Jaroslav Kypr, Michaela Vorlíčková

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 582 KB

english, 2003

22

Variations of the Mononucleotide and Short Oligonucleotide Distributions in the Genomes of Various Organisms

DAVID HÄRING, JAROSLAV KYPR

Journal:

Journal of Theoretical Biology

Année:

1999

Langue:

english

Fichier:

PDF, 194 KB

english, 1999

23

A fast computer algorithm for finding an optimum geometrical interaction of two macromolecules

Martin Šantavý, Jaroslav Kypr

Journal:

Journal of Molecular Graphics

Année:

1984

Langue:

english

Fichier:

PDF, 403 KB

english, 1984

24

DNA in phosphorus atom representation: the heteronomous double helices of poly(dA)·poly(dT) and poly(dG)·poly(dC) and simulation of the yeast genome and of a human chromosome DNA

Petr Hanzálek, Jaroslav Kypr

Journal:

Journal of Theoretical Biology

Année:

2005

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2005

25

Reading frames of HIV genes

Jaroslav Kypr, Jan Mrázek

Journal:

Journal of Theoretical Biology

Année:

1989

Langue:

english

Fichier:

PDF, 95 KB

english, 1989

26

Biased distribution of adenine and thymine in gene nucleotide sequences

Jan Mrázek, Jaroslav Kypr

Journal:

Journal of Molecular Evolution

Année:

1994

Langue:

english

Fichier:

PDF, 681 KB

english, 1994

27

DNA homoduplexes containing no pyrimidine nucleotide

Jaroslav Kypr, Iva Kejnovská, Michaela Vorlíčková

Journal:

European Biophysics Journal

Année:

2003

Langue:

english

Fichier:

PDF, 315 KB

english, 2003

28

Conformational properties of DNA fragments containing GAC trinucleotide repeats associated with skeletal displasias

Michaela Vorlícková, Iva Kejnovská, Marcela Tumová, Jaroslav Kypr

Journal:

European Biophysics Journal

Année:

2001

Langue:

english

Fichier:

PDF, 178 KB

english, 2001

29

Conserved guanine-guanine stacking in tetraplex and duplex DNA

Jaroslav Kypr, Markéta Fialová, Jana Chládková, Marcela Tůmová, Michaela Vorlíčková

Journal:

European Biophysics Journal

Année:

2001

Langue:

english

Fichier:

PDF, 99 KB

english, 2001

30

Photochemical probing of the B–A conformational transition in a linearized pUC19 DNA and its polylinker region

Karel Nejedlý, Jana Chládková, Jaroslav Kypr

Journal:

Biophysical Chemistry

Année:

2007

Langue:

english

Fichier:

PDF, 709 KB

english, 2007

31

Resistance of native protein shapes to random single point mutations in their genes

Journal:

Journal of Theoretical Biology

Année:

1990

Langue:

english

Fichier:

PDF, 86 KB

english, 1990

32

Possible reason for the preferential insertion of adenine opposite abasic lesions in DNA

Journal:

Journal of Theoretical Biology

Année:

1988

Langue:

english

Fichier:

PDF, 90 KB

english, 1988

33

UV Light-induced Crosslinking of the Complementary Strands of Plasmid pUC19 DNA Restriction Fragments

Šáka Pospíšilová, Jaroslav Kypr

Journal:

Photochemistry and Photobiology

Année:

1997

Langue:

english

Fichier:

PDF, 403 KB

english, 1997

34

UV Light-induced Duplex-to-duplex Crosslinking of DNA Molecules in Aqueous Ethanol Solutions

Šárka PospíŠlová, Jaroslav Kypr

Journal:

Photochemistry and Photobiology

Année:

1998

Langue:

english

Fichier:

PDF, 609 KB

english, 1998

35

Unusual codon usage of HIV

KYPR, JAROSLAV, MRÁZEK, JAN

Journal:

Année:

1987

Fichier:

PDF, 137 KB

1987

36

Mosaic structure of the DNA molecules of the human chromosomes 21 and 22

David Häring, Jaroslav Kypr

Journal:

Molecular Biology Reports

Année:

2001

Langue:

english

Fichier:

PDF, 442 KB

english, 2001

37

Circular Dichroism Spectroscopy of DNA: From Duplexes to Quadruplexes

Michaela Vorlíčková, Iva Kejnovská, Klára Bednářová, Daniel Renčiuk, Jaroslav Kypr

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 523 KB

english, 2012

38

Genomic DNA Regions Whose Complementary Strands Are Prone to UV Light-Induced Crosslinking

Karel Nejedlý, Radim Kittner, Jaroslav Kypr

Journal:

Archives of Biochemistry and Biophysics

Année:

2001

Langue:

english

Fichier:

PDF, 160 KB

english, 2001

39

Escherichia coli Genome Is Composed of Two Distinct Types of Nucleotide Sequences

David Häring, Jaroslav Kypr

Journal:

Biochemical and Biophysical Research Communications

Année:

2000

Langue:

english

Fichier:

PDF, 111 KB

english, 2000

40

No Isochores in the Human Chromosomes 21 and 22?

David Häring, Jaroslav Kypr

Journal:

Biochemical and Biophysical Research Communications

Année:

2001

Langue:

english

Fichier:

PDF, 495 KB

english, 2001

41

Tertiary Structures of the Escherichia coli and Human Chromosome 21 Molecules of DNA

Petr Hanzálek, Jaroslav Kypr

Journal:

Biochemical and Biophysical Research Communications

Année:

2001

Langue:

english

Fichier:

PDF, 105 KB

english, 2001

42

Structural Polymorphism of d(GA · TC)n DNA Sequences: Intramolecular and Intermolecular Associations of the Individual Strands

J.M. Casasnovas, D. Huertas, M. Ortiz-Lombardı́a, J. Kypr, F. Azorı́n

Journal:

Journal of Molecular Biology

Année:

1993

Fichier:

PDF, 759 KB

1993

43

An A-type double helix of DNA having B-type puckering of the deoxyribose rings

Lukáš Trantı́rek, Richard Štefl, Michaela Vorlı́čková, Jaroslav Koča, Vladimı́r Sklenářář, Jaroslav Kypr

Journal:

Journal of Molecular Biology

Année:

2000

Langue:

english

Fichier:

PDF, 435 KB

english, 2000

44

A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC)

Richard Štefl, Lukáš Trantı́rek, Michaela Vorlı́čková, Jaroslav Koča, Vladimı́r Sklenář, Jaroslav Kypr

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 281 KB

english, 2001

45

Thermal melting of poly(dA-dT).poly(dA-dT) in methanol-water solutions

Jaroslav Kypr, Michaela Vorlíčková

Journal:

Biochemical and Biophysical Research Communications

Année:

1984

Langue:

english

Fichier:

PDF, 275 KB

english, 1984

46

RNA-Like conformational properties of a synthetic DNA poly(dA-dU).poly(dA-dU)

Jaroslav Kypr, Michaela Vorlíčková

Journal:

Biochemical and Biophysical Research Communications

Année:

1985

Langue:

english

Fichier:

PDF, 267 KB

english, 1985

47

Possible mechanism of the allosteric activation of cAMP receptor protein

Jaroslav Kypr, Jan Mrázek

Journal:

Biochemical and Biophysical Research Communications

Année:

1985

Langue:

english

Fichier:

PDF, 328 KB

english, 1985

48

Pseudogene in the genome of bacteriophage lambda?

Jaroslav Kypr, Jan Mrázek

Journal:

Biochemical and Biophysical Research Communications

Année:

1987

Langue:

english

Fichier:

PDF, 350 KB

english, 1987

49

Recognition and use of the unusual X-DNA as a primer-template by Klenow DNA polymerase enzyme

J. Sági, M. Vorlíčková, J. Kypr, L. Ötvös

Journal:

Biochemical and Biophysical Research Communications

Année:

1989

Langue:

english

Fichier:

PDF, 478 KB

english, 1989

50

Nucleotide composition of genes and hydrophobicity of the encoded proteins

Jan Mázek, Jaroslav Kypr

Journal:

Année:

1992

Langue:

english

Fichier:

PDF, 222 KB

english, 1992